Welcome to DashingTurtle’s Documentation!

DashingTurtle is a toolkit for analyzing and visualizing RNA chemical probing data. Whether you’re using the GUI or CLI, this guide will help you get up and running quickly.

📘 Contents:

Getting Started

• Installation
  • Step 1: Install ViennaRNA for putative structures
  • Step 2: Install Docker (for the database)
  • Step 3: Set Up the Python Environment
  • Step 5: Run the Application
  • Database Management
  • Data Output
  • Sample Data
  • Help and Support
• Usage Guide
  • Overview: Visual Workflow
  • Step 1: Add Your Sequences
  • Step 2: List Sequences & Get LIDs
  • Step 3: Load Basecall and Signal Data
  • Step 4: Run Predictions
  • Step 5: Create Landscape
  • Cheat Sheet
  • Summary
• Issues & Troubleshooting
• Mac OS Installation
  • Docker/Database Issues
• Linux Installation
  • Prerequisite Libraries/Plugins
  • Docker Issues
• DashML
  • DashML package

Indices and Tables

• Index

• Module Index

• Search Page